Proteomic
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Peptizer v.1.8
Automate the manual validation process with this software. Manual validation of MS/MS driven peptide identification is a critical evaluation process relying on expert knowledge. Following the onset of large-scale proteomic endeavors,
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PEAKS Studio 6.0 Build v.20120
PEAKS is proteomic mass spectrometry software, designed for the researcher interested in highly confident results.
MMass (Open Source Mass Spectrometry Tool) v.5.2.0
mMass (Open Source Mass Spectrometry Tool) presents open source multi-platform package of tools for precise mass spectrometric data analysis and interpretation. It is written in Python language and released under GNU General Public License,
JTreeview v.1.0
Tree file viewer fast and easy. JTreeview is a convenient, easy-to-use tool designed to help you view tree files. This viewer is limited to Newick format (or the custom save format, based on Newick).
BLATview v.1.0
View blast files. BLATview help you analyze blast files and enables you to view the alignments. The software has grown quite a bit since the beginning, so it has become less easy/intuitive to use, but MUCH more strong.Requirements: *
MzIdentML Viewer v.1.0
MzIdentML Viewer is a tiny, easy-to-use .MZID files viewer with just a click. This software makes use of the MzIdentML API. The Proteomics Information Group has developed MzIdentML,
AlnEdit v.1.0
Edit alignments with this tool. AlnEdit is for protein sequences. AlnEdit is capable of handling large alignments (thousands of sequences) without slowing to a crawl and where sequence alignments could be edited by hand.A few features: 1. This is an
CLANS v.2
CLANS is a small tool written in Java for cluster analysis of sequences. Frequently, homology is used as a reason to transfer knowledge about function or structure from known to unknown proteins.
SSalign v.1.0
SSalign is a DNA/RNA alignment program. This software was developed due to a need to look at all possible stem-loop structures that a large number of DNA/RNA sequences could form.